Bacterial Secretion Systems: An Overview

ABSTRACT Bacterial pathogens utilize a multitude of methods to invade mammalian hosts, damage tissue sites, and thwart the immune system from responding. One essential component of these strategies for many bacterial pathogens is the secretion of proteins across phospholipid membranes. Secreted proteins can play many roles in promoting bacterial virulence, from enhancing attachment to eukaryotic cells, to scavenging resources in an environmental niche, to directly intoxicating target cells and disrupting their functions. Many pathogens use dedicated protein secretion systems to secrete virulence factors from the cytosol of the bacteria into host cells or the host environment. In general, bacterial protein secretion apparatuses can be divided into classes, based on their structures, functions, and specificity. Some systems are conserved in all classes of bacteria and secrete a broad array of substrates, while others are only found in a small number of bacterial species and/or are specific to only one or a few proteins. In this chapter, we review the canonical features of several common bacterial protein secretion systems, as well as their roles in promoting the virulence of bacterial pathogens. Additionally, we address recent findings that indicate that the innate immune system of the host can detect and respond to the presence of protein secretion systems during mammalian infection.


INTRODUCTION
One essential prokaryotic cell function is the transport of proteins from the cytoplasm into other compartments of the cell, the environment, and/or other bacteria or eukaryotic cells-a process known as protein secretion.Prokaryotes have developed numerous ways of transporting protein cargo between locations, which largely involve the assistance of dedicated protein secretion systems.Protein secretion systems are essential for the growth of bacteria and are used in an array of processes.Some secretion systems are found in almost all bacteria and secrete a wide variety of substrates, while others have been identified in only a small number of bacterial species or are dedicated to secreting only one or a few proteins.In certain cases, these dedicated secretion systems are used by bacterial pathogens to manipulate the host and establish a replicative niche.Other times, they are required to take advantage of an environmental niche, perhaps by secreting proteins that help bacteria to compete with nearby microorganisms.There are several different classes of bacterial secretion systems, and their designs can differ based on whether their protein substrates cross a single phospholipid membrane, two membranes, or even three membranes, where two are bacterial and one is a host membrane.Due to the specificity of expression of some of these secretion systems in bacterial pathogens, antimicrobials are being developed against these systems to augment our current repertoire of antibiotics.This topic is discussed in Section VII, "Targeted Therapies".
Five secretion systems will be discussed in depth in subsequent chapters in this section: the type III secretion system (T3SS), T4SS, T5SS, T6SS, and T7SS.In this overview, we provide a brief introduction to several protein secretion systems, including those that are not discussed in depth in other chapters, to highlight the structural and functional similarities and differences between these systems.Our discussions will focus on the canonical features of each system rather than the multitude of variations (Table 1).In addition, we will briefly review recent findings that indicate that the innate immune system of the host can detect and respond to the presence of protein secretion systems during mammalian infection.

SECRETION ACROSS THE CYTOPLASMIC MEMBRANE
A major focus of this chapter is the use of dedicated secretion systems to transport proteins out of the bacterial cell and into the environment or into a recipient cell.However, protein secretion from the bacterial cytoplasmic compartment into other compartments of the cell, particularly into or across the cytoplasmic membrane, also occurs.The general secretion (Sec) and twin arginine translocation (Tat) pathways are the bacterial secretion systems most commonly used to transport proteins across the cytoplasmic membrane (1).The Sec and Tat pathways are the most highly conserved mechanisms of protein secretion and have been identified in all domains of life (bacteria, archaea, and eukarya) (2,3).Most proteins transported by the Sec and Tat pathways remain inside the cell, in either the periplasm or the inner membrane.However, in Gramnegative bacteria, proteins delivered to the cytoplasmic membrane or periplasm of the cell by the Sec or Tat pathway can either stay in those compartments or may be transported outside of the cell with the help of another secretion system.While the Sec and Tat systems have several common elements, they transport proteins by fundamentally different mechanisms.

The Sec Secretion Pathway
The Sec pathway primarily translocates proteins in their unfolded state.This system consists of three parts: a protein targeting component, a motor protein, and a membrane integrated conducting channel, called the SecYEG translocase (2).Additionally, several Grampositive bacteria produce Sec accessory proteins that serve important roles in the secretion of specific proteins.While proteins secreted by the Sec apparatus can serve many roles, a number of proteins that promote virulence of bacterial pathogens are transported through this pathway.Pathogens that use Sec-dependent secretion to transport virulence factors across the cytoplasmic membrane include the Gram-negative bacteria Vibrio cholerae, Klebsiella pneumoniae, and Yersinia enterocolitica (4).Examples of Gram-positive pathogens that employ Sec accessory systems include Staphylococcus aureus and Listeria monocytogenes (5)(6)(7)(8).The use of Sec accessory proteins in secretion by Gram-positive bacteria will be covered in more detail later in this chapter.
Export by the Sec pathway relies on a hydrophobic signal sequence at the N-terminus of the secreted protein, which is typically 20 amino acids in length and contains three regions: a positively charged amino terminal, a hydrophobic core, and a polar carboxyl-terminal (2).Proteins that will be secreted into the periplasm or outside of the cell by the Sec pathway contain SecB-specific signal sequences, while proteins meant to remain in the inner membrane contain a signal recognition particle (SRP)-specific signal sequence.The differences between these two pathways are outlined below (2).

The SecB pathway
In many Gram-negative bacteria, proteins destined for transport to the periplasm or outside of the cell contain a removable signal sequence recognized by the SecB protein (Fig. 1A).This protein serves as a chaperone, binding to presecretory proteins and preventing them from folding (9).SecB then delivers its substrates to SecA, a multifunctional protein that both guides proteins to the SecYEG channel and serves as the ATPase that provides the energy for protein translocation (10).Prior to transport through the channel, a protease protein cleaves off the SecB signal sequence from the protein, and the secreted protein is then is folded upon delivery to the periplasm (11).While many proteins delivered by the SecB system remain in the periplasm, some will ultimately become extracellular.Once these proteins are delivered to the periplasm, they can be transported Export through the Sec pathway.In bacteria, the Sec pathway transports unfolded proteins across the cytoplasmic membrane.Proteins secreted by this pathway may either become embedded in the inner membrane or will be released into the periplasm.In Gram-negative organisms, these periplasmic proteins may be released extracellularly with the help of an additional secretion system.(A) Proteins destined for the periplasm (or extracellular release) are translocated by a posttranslational mechanism and contain a removable signal sequence recognized by the SecB protein.SecB binds presecretory proteins and prevents them from folding while also delivering its substrates to SecA.SecA both guides proteins to the SecYEG channel and serves as the ATPase that provides the energy for protein translocation.Following transport through the SecYEG channel, proteins are folded in the periplasm.(B) The Sec pathway utilizes a cotranslational mechanism of export to secrete proteins destined for the inner membrane.These proteins contain a signal sequence recognized by the signal recognition particle (SRP).During translation, the SRP binds target proteins as they emerge from the ribosome and recruits the docking protein FtsY.FtsY delivers the ribosome-protein complex to the SecYEG channel, which translocates the nascent protein across the cytoplasmic membrane.During translocation across the channel, the transmembrane domain is able to escape through the side of the channel into the membrane, where the protein remains attached.
across the outer membrane with the help of the T2SS and T5SS.We will discuss these Sec-dependent mechanisms of protein secretion in detail later in this chapter.

The SRP pathway
The Sec system can also transport proteins that are meant to remain in the inner membrane by way of the SRP pathway (Fig 1B).Transmembrane proteins often contain hydrophobic domains and thus are unstable when cytoplasmic.Therefore, secretion by the SRP pathway utilizes a cotranslational mechanism of export that couples translation of the protein by the ribosome with secretion through the SecYEG channel (12).The SRP pathway relies on the SRP particle, which contains a small, 4.5S RNA bound to a protein called Ffh (12).During protein secretion by this pathway, the SRP first binds the transmembrane domain of proteins as they emerge from the ribosome (13).The SRP then binds the docking protein FtsY, which delivers the ribosome-protein complex to the SecYEG channel (2).Translation of the protein then drives the secretion of the nascent protein through the channel.During this process, the transmembrane domain of the protein escapes through the side of the channel into the membrane, where it remains attached (14).The mechanism of this final step is not yet known.

The Tat Secretion Pathway
In contrast to the Sec pathway, the Tat pathway primarily secretes folded proteins (3) (Fig. 2).This pathway is critical because not all proteins can be secreted in their unfolded state.For example, certain proteins that contain posttranslational modifications, such as redox factors, which are synthesized in the cytoplasm (15).Because the materials required for these modifications would not be available extracellularly or in the periplasm and, these proteins must be folded and modified in the cytoplasm prior to secretion in their threedimensional state.
The Tat pathway of protein secretion consists of two or three subunits: TatA, TatB, and TatC (in Grampositive bacteria, TatA and TatB are combined into one multifunctional protein) (16,17).The Tat signal sequence contains a pair of "twin" arginines in the motif S-R-R at the N-terminus of the folded protein (18).In Escherichia coli, TatB and TatC bind the signal peptide of Tat-secreted proteins and then recruit TatA, which forms the membrane-spanning channel (18).Whereas most proteins secreted by the Tat apparatus in Grampositive bacteria are released extracellularly, Tatsecreted proteins in Gram-negative bacteria can either remain periplasmic or are transported out of the cell by the T2SS through a mechanism that will be reviewed later in this chapter.
While the Tat pathway is important for the physiology and survival of both pathogenic and nonpathogenic bacteria, several pathogenic bacteria, including Pseudomonas aeruginosa (19), Yersinia pseudotuberculosis (20), and E. coli O157:H7 (21), require a func-FIGURE 2 Secretion through the Tat pathway.Bacteria secrete folded proteins across the cytoplasmic membrane using the Tat secretion pathway.This pathway consists of two or three components (TatA, TatB, and TatC).In Gram-negative bacteria, TatB and TatC bind a specific N-terminal signal peptide containing a "twin" arginine motif on folded Tat secretion substrates.TatB and TatC then recruit TatA to the cytoplasmic membrane, where it forms a channel.Folded proteins are then translocated across the channel and into the periplasm.In Gram-negative bacteria, these proteins may remain in the periplasm or can be exported out of the cell by the T2SS.
tional Tat pathway for full virulence in animal infection models.Phospholipase C enzymes are a notable example of Tat-secreted proteins that serve as virulence factors for a number of pathogens, including P. aeruginosa (19), Legionella pneumophila (22), and Mycobacterium tuberculosis (23).These enzymes, which cleave phospholipids immediately before their phosphate group, can serve a variety of functions during infection, including suppression of immune cell activity and promotion of intracellular survival (24).

PROTEIN SECRETION BY GRAM-NEGATIVE BACTERIA
Several Gram-negative bacteria rely on dedicated secretion systems to transport virulence proteins outside of the cell and, in some cases, directly into the cytoplasm of a eukaryotic or prokaryotic target cell.Extracellular protein secretion can be a challenge for Gram-negative bacteria, because these secreted proteins must cross two (and in some cases three) phospholipid membranes to reach their final destination (Fig. 3).Some secreted proteins in Gram-negative bacteria traverse these membranes in two separate steps, where they are first delivered to the periplasm through the Sec or Tat secretion systems, as discussed in the preceding section, and are then transferred across the outer membrane by a second transport system.This process is known as Sec-or Tatdependent protein secretion.Additionally, many other proteins are secreted through channels that span both the inner and outer bacterial membranes through a process known as Sec-or Tat-independent protein secretion.The dedicated secretion systems in Gram-negative bacteria are numbered type I through type VI, with each system transporting a specific subset of proteins.These systems all rely on β-barrel channels that form a ring FIGURE 3 Secretion systems in Gram-negative bacteria.Gram-negative bacteria utilize a number of dedicated protein secretion systems to transport proteins across one, two, or three phospholipid membranes.Some proteins are secreted in a two-step, Sec-or Tat-dependent mechanism.These proteins cross the inner membrane with the help of either the Sec or Tat secretion pathways and are then transported across the outer membrane using a second secretion system.The T2SS and T5SS secrete proteins in this manner.Because it secretes folded substrates, the T2SS translocates proteins initially transported by either the Tat or Sec pathway (where Sec substrates are folded in the periplasm).In contrast, autotransporters of the T5SS must be unfolded prior to outer membrane transport and thus must be secreted across the inner membrane by the Sec pathway.Additionally, several Gram-negative protein secretion systems transport their substrates across both bacterial membranes in a one-step, Sec-or Tat-independent process.These include the T1SS, T3SS, T4SS, and T6SS.All of these pathways contain periplasm-spanning channels and secrete proteins from the cytoplasm outside the cell, but their mechanisms of protein secretion are quite different.Three of these secretion systems, the T3SS, T4SS, and T6SS, can also transport proteins across an additional host cell membrane, delivering secreted proteins directly to the cytosol of a target cell.
Bacterial Secretion Systems: An Overview in the outer membrane of the bacterial cell, but otherwise they exhibit a fair amount of diversity in their structures and mechanistic functions, as will be outlined below.

The T1SS
T1SSs have been found in a large number of Gramnegative bacteria, including pathogens of plants and animals, where they transport their substrates in a onestep process (as demonstrated in Fig. 3) across both the inner and outer bacterial membranes (recently reviewed in reference 25).Unlike other protein transport systems found in Gram-negative bacteria, T1SSs closely resemble a large family of ATP-binding cassette (ABC) transporters, which export small molecules such as antibiotics and toxins out of the cell (26).Some bacteria may have several T1SSs, each of which is dedicated to transporting one or a few unfolded substrates (27).These substrates range in function and include digestive enzymes, such as proteases and lipases, as well as adhesins, heme-binding proteins, and proteins with repeats-in-toxins (RTX) motifs.T1SS substrates are generally Sec-independent and typically, but not always, contain a C-terminal signal sequence that is recognized by the T1SS and remains uncleaved (see below).
T1SSs have three essential structural components: (i) an ABC transporter protein in the inner membrane and (ii) a membrane fusion protein (MFP) that crosses the inner membrane and bridges it to the outer membrane, and (iii) the outer membrane factor (OMF) in the outer membrane (25).The ABC transporter component associated with the T1SS has several critical functions: it catalyzes ATP to provide the energy to transport the substrate, interacts with the MFP, and participates in substrate recognition (28).The MFP associates with the ABC transporter in the inner membrane and spans the periplasm to associate with the OMF (29)(30)(31).In addition, the cytoplasmically located N-terminus of the MFP is believed to play a role in substrate selection (30,32).The OMF generates a pore in the outer membrane, through which the substrate passes in an unfolded state.Interestingly, T1SSs often use the multipurpose protein TolC as their OMF (27).This pore-forming protein is also used to export molecules and other compounds and is recruited to the MFP after the ABC transporter and MFP have contacted a substrate (32).
The T1SS ABC transporters have been further divided into three groups based on their N-terminal sequences (reviewed in reference 28).One class of ABC transporters contains a C39 peptidase domain, which belongs to the papain superfamily structural motif.The C39-peptidase-containing ABC-transporters are critical for recognizing and cleaving the N-termini of substrates.An example of a T1SS substrate with a C39 peptidase domain is Colicin V of E. coli (33).A second class of ABC transporters contains a C39-like peptidase domain that lacks proteolytic activity and therefore does not cleave its designated substrates (34).Substrates of C39like peptidase domain-containing ABC transporters generally contain RTX motifs and are much larger than those secreted by a C39-containing peptidase ABC transporter.Interestingly, RTX motifs bind to calcium at extracellular, but not intracellular, levels.Because calcium binding promotes the folding of these proteins, these large substrates are able to remain unfolded inside the cell (35).Finally, a third class of T1SS ABC transporters lacks any additional sequences in the N-terminal domain.Their substrates may or may not contain RTX motifs but are smaller in size than substrates transported by C39-like peptidase domain-containing ABC transporters and contain secretion signals at their C-termini (27).
T1SS substrates contribute to virulence in a variety of bacterial pathogens, including V. cholerae, which uses its T1SS to secrete the MARTX toxin (36), and Serratia marcescens, which secretes the hemophore HasA via the T1SS pathway (29).One of the beststudied T1SS substrates is the HlyA hemolysin protein of uropathogenic E. coli (37)(38)(39).This RTX-family toxin inserts into the membranes of both erythrocytes and nucleated eukaryotic cells, causing them to rupture (37).Rupture of host cells by HlyA can help the bacteria to cross mucosal barriers and, additionally, can damage effector immune cells, which prevents clearance of the infection.

The T2SS
T2SSs are conserved in most Gram-negative bacteria, where they transport folded proteins from the periplasm into the extracellular environment.Because the T2SS channel is found only in the outer membrane (Fig. 3), proteins secreted through this apparatus must first be delivered to the periplasm via the Sec or Tat secretion pathways, which transfer protein substrates across the inner membrane, as described above.This secretion system was originally called the main terminal branch of the Sec secretion pathway due to its ability to export proteins transported across the inner membrane by the Sec secretion system (4).However, this nomenclature has since been updated to the T2SS to reflect the ability of these secretion systems to transport Tat-secreted proteins as well (40).Because proteins destined for secretion by the T2SS apparatus must first pass through the Sec or Tat inner membrane transporters, T2SS substrates must have a Sec-or Tat-type cleavable signal sequence at their N-termini (4).Additionally, because the T2SS secretes folded substrates, proteins transported across the cytoplasmic membrane by the Sec pathway must be folded in the periplasm prior to export through the T2SS.
T2SSs have a broad specificity and are capable of secreting a diverse array of substrates outside of the bacterial cell, some of which contribute to the virulence of bacterial pathogens (4).In some bacterial species, the T2SS is required for the secretion of multiple substrates, while in others, it is only used to transport a single protein (41).These secreted proteins have a range of biological functions but are generally enzymes, such as proteases, lipases, and phosphatases, as well as several proteins that process carbohydrates (4).
T2SSs are complex and consist of as many as 15 proteins, which can be broken down into four subassemblies: the outer-membrane complex, the inner-membrane platform, the secretion ATPase, and the pseudopilus (4).As its name suggests, the outer-membrane complex resides in the outer membrane, where it serves as the channel through which folded periplasmic T2SS substrates are translocated (42).This channel is composed of a multimeric protein called the secretin.The secretin has a long N-terminus, which is believed to extend all the way to the periplasm to make contact with other T2SS proteins in the inner membrane (42).The innermembrane platform, which is composed of multiple copies of at least four proteins, is embedded in the inner membrane and extends into the periplasm, contacting the secretin.This platform plays a crucial role in the secretion process by communicating with the secretin, pseudopilus, and ATPase to coordinate export of substrates (4).The ATPase is located in the cytoplasm and provides the energy to power the system.As its name implies, the T2SS pseudopilus is evolutionarily related and structurally similar to proteins that comprise type IV pili on bacterial cell surfaces, as well as some bacterial competence systems (43).Therefore, one model for secretion through the T2SS channel proposes that these pseudopili retract to push the folded T2SS substrate through the outer membrane channel.In this "piston" model, "secretion-competent" proteins in the periplasm contact the periplasmic domain of the secretin.This interaction is believed to stimulate the cytoplasmic ATPase to drive retraction of the T2SS pseudopili, which push proteins through the secretin channel (4,44,45).
A number of bacterial pathogens employ T2SSs to transport virulence factors outside of the cell.Examples of T2SS substrates that are important for virulence in a mammalian host include the cholera toxin of V. cholerae (46), which causes the watery diarrhea associated with the disease cholera, and exotoxin A of P. aeruginosa (47), which blocks protein synthesis in host cells, leading to lethal infection by this bacterium.Still other pathogens use their T2SSs to secrete enzymes that help them adapt to their environment, which can include plant and animal hosts.These pathogens include L. pneumophila (48), enterotoxigenic and enterohemorrhagic E. coli (49-51), K. pneumoniae (52), Aeromonas hydrophila (53), and Dickeya dadantii (54).

The T3SSs
T3SSs are found in a large number of Gram-negative bacterial pathogens and symbionts (reviewed in reference 55).T3SSs have been described as "injectisomes" and "needle and syringe"-like apparatuses because of their structure (see Fig. 3).They secrete a wide variety of proteinaceous substrates across both the inner and outer bacterial membranes.In addition, most T3SSs also transport substrates across a target eukaryotic cell membrane in the same step and, therefore, actually transport proteins across three membranes.Secretion of T3SS substrates is generally thought to be a one-step process, although recently this notion has been challenged in Yersinia (discussed below).T3SS substrates are generically called effector proteins.Pathogens may secrete only a few effector proteins, as in the cases of Pseudomonas and Yersinia, or several dozen, as in the cases of Shigella and enterohemorrhagic E. coli.Secretion signals are embedded within the N-termini of T3SS substrates and are not cleaved.Many, but not all, T3SS effectors have chaperones that guide them to the T3SS base, where they are secreted in an ATPdependent, unfolded state.
The T3SS has a core of nine proteins that are highly conserved among all known systems (reviewed in references 56, 57).They share eight of these proteins with the flagellar apparatus found in many bacteria and are evolutionarily related to flagellin (58).In addition to these 9 core proteins, T3SSs have an additional 10 to 20 proteins that play either essential or important roles in their function.The structural components of T3SSs are typically encoded in a few operons, which can be found either in pathogenicity islands in the bacterial chromosome or on plasmids.Because T3SSs are typically horizontally acquired, bacteria that are evolutionarily distinct may have closely related systems and Bacterial Secretion Systems: An Overview vice versa (58).For example, the genomes of Shigella and E. coli are highly homologous, yet the Shigella T3SS is more similar to the Salmonella T3SS than it is to systems found in the pathogens enterohemorrhagic E. coli and enteropathogenic E. coli.Seven families of T3SSs have been proposed, primarily based on the homology of their extracellularly elaborated needles, tips, and translocons (58).
The T3SS can be broken down into three main components: a base complex or basal body, the needle component, and the translocon (56).The base complex contains cytoplasmic components and spans the inner and outer membrane, forming a socket-like structure consisting of several rings with a center rod (59).In most systems it is comprised of at least 15 proteins (56,57).Encased by and emanating from this socket and rod-like structure is a filament called the needle, which extends through the secretin and into the extracellular space (59).The T3SS needle has an inner hollow core that is wide enough to permit an unfolded effector to traverse (60,61).Excitingly, recent work has visualized a "trapped" effector protein by cryo-electron microscopy and single particle analysis, supporting the model in which substrates can traverse through the needle (62,63).
The T3SS tip complex, which resides on the outer end of the needle, is critical for sensing contact with host cells and regulating secretion of effectors (64,65).It is also necessary for insertion of the translocon into host cell membranes (65,66).The T3SS translocon is essential for passage of effectors through host cell membranes, but not for secretion of effectors outside of the bacterium (67,68).Translocons are assembled upon contact with host cells and form a pore that is essential for effector delivery (66).Recently, however, an alternative two-step model of translocation of type 3 effectors was proposed, where effectors and translocon components are secreted prior to host cell contact and remain associated with the bacteria, perhaps in lipid vesicles (69,70).After contact with host cells, perhaps sensed through the needle, the translocon and tip proteins form a pore through which the effectors pass.Additional experiments are needed to determine the mechanism by which translocation occurs.
Translocation of T3SS effectors into host cells is essential for the virulence of many pathogens, including pathogenic species of Yersinia, Salmonella, and Shigella (55).Over the past 25 years, much work has focused on understanding the functions of T3SS effector proteins.Their functions vary widely among different pathogens, and how they jointly orchestrate their effects on host cells is still being elucidated (71)(72)(73)(74).Many of these effectors remodel normal cellular functions to enable the pathogen to establish an infectious niche either within the host cell or in mammalian tissue sites.Impressively, the study of these effectors has provided fundamental insights into several facets of eukaryotic cell biology.

The T4SS
T4SSs are ancestrally related to bacterial DNA conjugation systems and can secrete a variety of substrates, including single proteins and protein-protein and DNAprotein complexes (75).T4SSs secrete substrates into a wide range of target cells, including other bacteria (of the same or different species) and eukaryotic cells.These macromolecular complexes are largely found in Gramnegative bacteria, where they transport substrates across both the inner and outer membranes (Fig. 3).Like T3SSs, T4SSs can span an additional host cell membrane, allowing for direct transfer of substrates into the cytoplasm of the recipient cell.Because T4SSs are capable of transferring both DNA and proteins, they can serve a variety of functions, including conjugative transfer of DNA, DNA uptake and release, and translocation of effector proteins or DNA/protein complexes directly into recipient cells.
Despite the diversity in their substrates and functions, all T4SSs are evolutionarily related, sharing common components and operating in a similar manner (76).Therefore, the remainder of this section will focus on the VirB/D system of Agrobacterium tumeficans as a model of type IV secretion.A. tumeficans uses its T4SS to transport oncogenic transfer DNA into plant cells and has served as the paradigm for studying T4SS assembly and function (77).The VirB/D T4SS contains 12 proteins: VirB1 to VirB11 and VirD4 (78).Most of these proteins are membrane-associated and multicopy, interacting with themselves and each other.The VirB6 to VirB10 proteins are found in the periplasm and inner and outer membranes and form the secretion channel as well as its accessory proteins.VirB4, VirB11, and VirD4 localize to the inner membrane and serve as the ATPases that power the system.VirD4 also functions as a coupling protein, binding proteins prior to secretion through the channel.Generally, T4SSs also include an extracellular pilus, composed of a major (VirB2) and minor (VirB5) subunit.
The process of substrate secretion through the T4SS apparatus is still an active area of investigation.However, it is believed that substrate DNA or protein first makes contact with VirD4, which functions as a molecular "gate" at the base of the secretion apparatus (79).VirD4 then transfers the substrate to VirB11, which delivers the substrate to the inner membrane channel complex.Finally, the substrate is transferred across the periplasm to the outer membrane protein complex.It is not currently known what role the T4SS pilus plays in the secretion process.Some believe that the pilus may serve merely as an attachment device, allowing bacteria to come into tight contact with target cells (78).Others have predicted that the pilus may actually serve as the conduit for substrate translocation, particularly into target cells (80).Work to determine which of these two models is correct is currently ongoing.
T4SSs play pivotal roles in the pathogenesis of a wide range of bacteria.Notable examples of bacterial pathogens that employ T4SSs for virulence are Neisseria gonorrhoeae, which uses its T4SS to mediate DNA uptake (which promotes virulence gene acquisition) (81), and L. pneumophila, Brucella suis, and Helicobacter pylori, which use their T4SSs to translocate effector proteins into host cells during infection to disrupt their defense strategies (82).These effector proteins have a wide range of functions.For example, the intracellular pathogen L. pneumophila uses its T4SS to translocate more than 200 effector proteins into the host cell, where they play important roles in remodeling the host cell architecture to create a vacuole suitable for bacterial replication (83).A major focus in the T4SS field is now on understanding how these effector proteins affect host cell functions.In addition to enhancing our understanding of host-pathogen interactions, these studies have also led to novel insights into eukaryotic cellular biology.

The T5SS
T5SS substrates are unique in that, unlike other secreted substrates, which cross the bacterial membrane with the help of a dedicated secretion apparatus or membrane channel, they secrete themselves.These proteins or groups of proteins carry their own β-barrel domain, which inserts into the outer membrane and forms a channel through which either the remainder of the protein or a separate protein is transported (84,85).Because protein secretion by T5SSs occurs only in the outer membrane, these proteins must first be translocated across the inner membrane and into the periplasm in an unfolded state by the Sec apparatus (Fig. 3).Therefore, T5SS proteins carry an N-terminal Sec signal sequence that is cleaved off as they pass into the periplasm (86).
Most well-known T5SS substrates are virulence proteins, serving as toxins and receptor-binding proteins.Some examples of T5SS substrates that play important roles in pathogenesis include the immunoglobulin A protease of N. gonorrhoeae, which cleaves host antibodies (87), the IcsA protein of Shigella flexneri (88), which promotes actin-based intracellular motility and also serves as an adhesin (89), and YadA of Y. enterocolitica (90), which helps to promote translocation of T3SS substrates into host cells and assists in mediating resistance to attack by the host complement system (91).T5SSs can be separated into three classes, depending on the number of proteins involved in the secretion process.These classes include autotransporter secretion, two-partner secretion, and chaperone-usher secretion (92).

Autotransporter secretion
The simples form of type V secretion is known as the autotransporter system.As the name implies, autotransporters contain components that allow them to secrete themselves (92).More specifically, autotransporters contain three or four domains: a translocator domain at the C-terminus that forms the outer membrane channel, a linker domain, a passenger domain that contains the functional part of the autotransporter protein, and sometimes a protease domain that cleaves off the passenger domain once it passes through the channel (85).
Following secretion of the unfolded autotransporter protein through the inner membrane, the translocator domain assembles in the outer membrane, forming a 12-stranded β-barrel, usually with the help of several accessory factors, including the periplasmic chaperone Skp and the Bam complex (93,94).The flexible linker domain then leads the passenger domain through the channel to the outside of the cell.Once the transporter domain has reached the outside of the cell, it is either released by its own protease domain or remains attached to the translocator domain and protrudes outside the cell (85).

Two-partner secretion
While the majority of T5SS substrates are secreted via the autotransporter mechanism, a few rely on different polypeptides for transport outside of the cells.In a process called two-partner secretion, a pair of proteins participates in the secretion process, in which one partner carries the β-barrel domain while the other partner serves as the secreted protein (95).Twopartner secretion has been observed in a large variety of Gram-negative bacteria and is primarily responsible for transporting large virulence proteins, such as the Bacterial Secretion Systems: An Overview filamentous hemagglutinin of Bordetella pertussis and the high-molecular-weight adhesins HWM1 and HWM2 of Haemophilus influenzae (96,97).

Chaperone-usher secretion
A third subcategory of T5SSs involves proteins secreted with the help of two other proteins: the usher protein, which forms the β-barrel channel in the outer membrane, and the chaperone, a periplasmic protein that facilitates folding of the secreted protein prior to delivery to the channel (98).Chaperone-usher systems are commonly used to assemble pilins on the surface of Gram-negative bacteria, such as the P. pilus of uropathogenic E. coli (98).

The T6SS
T6SSs are the most recent bacterial secretion systems to be discovered (99), and therefore, there is still much to learn about their structure and functions.T6SSs translocate proteins into a variety of recipient cells, including eukaryotic cell targets and, more commonly, other bacteria (100).These systems are fairly well conserved in a wide-range of Gram-negative bacterial species, with nearly a quarter of sequenced genomes containing genes for T6SS components (101).Unlike many of the other characterized Gram-negative secretion systems, T6SSs are capable of transporting effector proteins from one bacterium to another in a contact-dependent manner, which is believed to play a role in bacterial communication and interactions in the environment (100).
T6SSs are very large, with up to 21 proteins encoded within a contiguous gene cluster (100).Thirteen of these proteins appear to be conserved in all T6SSs and are thought to play a structural role in the secretion apparatus.Intriguingly, T6SSs share structural homology to phage tails, and it has been hypothesized that T6SSs may have arisen from inverted phage tails that eject proteins outside of the bacterial cell rather than injecting them inside the cell (Fig. 3) (102).It has been proposed that some structural components of the T6SS apparatus may also serve as effector proteins, though other T6SS effector proteins have also been identified.These effectors have many forms and functions, with many directed against the bacterial cell wall and membrane, which supports a role for this secretion apparatus in promoting interspecies bacterial competition (100,101).Lending further credence to this hypothesis, many T6SS effectors are encoded alongside a gene that provides immunity to the effector, thereby preventing self-intoxication (100).
T6SSs are hypothesized to contribute to the virulence of some bacterial pathogens, both through delivery of protein substrates to host cells and by secreting substrates into neighboring bacteria that may be competing to exploit a specific host niche.While we know that many bacterial pathogens, including P. aeruginosa, V. cholerae, and S. marcescens are able to use their T6SSs under laboratory conditions (101)(102)(103), the mechanisms of how these T6SSs contribute to survival in the environment (and in mammalian infection) have not been determined.

PROTEIN SECRETION BY GRAM-POSITIVE BACTERIA
Thus far, our discussion of protein secretion has primarily focused on Gram-negative bacteria, which possess two phospholipid membranes separated by a periplasm compartment containing a thin layer of peptidoglycan.In contrast, as demonstrated in Fig. 4, Gram-positive bacteria contain only one lipid bilayer and are surrounded by a very thick cell wall (considerably thicker than that of Gram-negative bacteria).Additionally, some species of Gram-positive bacteria, most notably the Mycobacteria, contain a cell wall that is heavily modified by lipids, called a mycomembrane (Fig. 5).Because of these differences in basic cell structure, it is not surprising that Gram-positive bacteria differ from Gram-negative organisms in their mechanisms of extracellular protein secretion.Like Gram-negative organisms, Gram-positive bacteria employ both the Tat and Sec pathways to transport proteins across the cytoplasmic membrane.However, in many cases, this transport is not sufficient to deliver proteins to their final destinations.In the following section, we review conserved mechanisms of protein secretion in Gram-positive bacteria including Mycobacteria, many of which are used by pathogens to transport important virulence factors out of the cell during mammalian infection.

SecA2 Secretion
As discussed above, the Sec secretion pathway is one of the most conserved mechanisms of protein export and is found in all classes of bacteria.An essential component of posttranslational Sec export (through the SecB pathway) is the targeting and ATPase protein SecA.For years, it was thought that all bacteria contained a single SecA protein; however, recent discoveries have shown that many Gram-positive organisms, including L. monocytogenes, Bacillus subtilis, Clostridium difficile, M. tuberculosis, and Corynebacteria glutamicum, contain two SecA homologues, called SecA1 and SecA2 (reviewed in references 104, 105) (Fig. 4).In these organisms, SecA1 is essential and aids in the secretion of proteins via the canonical Sec pathway, as described above.In contrast, SecA2 is seldom required for growth under standard laboratory conditions and is used to export a smaller set of proteins.Generally, SecA2 substrates are involved in stress responses and/or cell wall modifications, repair, and metabolism.While SecA2 is often not essential for growth under normal laboratory FIGURE 5 The T7SS.Certain Gram-positive organisms, including members of the genus Mycobacteria, contain a cell wall layer that is heavily modified by lipids, called a mycomembrane.These organisms contain a distinct protein secretion apparatus called a T7SS.T7SSs contain several core inner membrane proteins that interact with cytosolic chaperones and form a channel through which proteins are secreted.Additionally, it has been proposed that T7SSs may contain an additional, mycomembrane-spanning channel that aids in extracellular secretion of substrates, though this model has not been experimentally proven.

FIGURE 4
Four secretion systems in Gram-positive bacteria.Gram-positive bacteria contain a single cytoplasmic membrane surrounded by a very thick cell wall.These organisms can secrete proteins across the membrane using the Tat and Sec secretion systems.In contrast to Gram-negative organisms, many Gram-positive bacteria use an additional factor for Sec secretion of a smaller subset of proteins, called SecA2.Additionally, there is evidence that some Gram-positive bacteria may use dedicated secretion apparatuses, called "injectosomes" to transport proteins from the bacterial cytoplasm into the cytoplasm of a host cell in a two-step process.The specific mechanism of this process has not been determined, though it has been proposed that the injectosome may utilize a protected channel to transport proteins across the cell wall during export.conditions, it is required under specific stress conditions and has also been linked to virulence.
It is currently thought that the SecYEG core transporter transports SecA2 substrates and that SecA2 provides an additional means of regulation of specific substrates.The SecA2 protein, like SecA, contains two nucleotide-binding domains, a preprotein cross-linking domain, a helical wing and helical scaffold domain, and a C-terminal domain (106).However, most SecA2 proteins are smaller than their corresponding SecA homologs, because they have small deletions in one of these domains (107).These deletions may alter the rate of ATP hydrolysis, the interaction with the rest of the Sec apparatus, and/or the location of SecA2 molecules (108,109).For these reasons, secretion of the substrates associated with SecA2 molecules may be regulated differently compared to secretion of SecA substrates.
Although some information has been gleaned from studies of SecA2 in various bacteria, there are a number of unanswered questions about SecA2 systems.While it appears most likely that SecA2 substrates are secreted through the normal SecYEG secretion system, SecA2 interactions with other transporters cannot be ruled out.Likewise, it is unclear how SecA2 interacts with SecYEG and how SecA versus SecA2 substrates are selected for secretion, if indeed both are directed to the same core apparatus.Finally, how SecA2 discriminates among potential substrates is poorly understood.
A number of Streptococci and Staphylococci express a second Sec secretion system called aSec or SecA2-SecY2.These systems not only contain SecA2, but also have other proteins that serve to transport SecA2 substrates, including SecY2 and at least three accessory Sec transport proteins.aSec systems typically transport large, highly glycosylated cell-wall anchor proteins with serine-rich repeats (110,111).These serine-rich repeat glycosylated proteins function as adhesins in several Streptococcus and Staphylococcus species and can contribute to virulence in these pathogens.
In contrast to bacteria that only express SecA1, bacteria expressing aSec are thought to transport substrates through a channel called SecY2.SecY2 lacks the cytoplasmic loops in SecY that normally interact with SecA1, and therefore SecA1-bound substrates are unlikely to interact with SecY2 transporters (107).In addition, there are three accessory proteins in this system, whose roles are not yet understood, although they are essential for secretion of these glycoproteins (112).All of these proteins localize to the membrane and cytosol and may help deliver the SecA2-substrate complex to SecY2, open the pore, assist in transport of the substrate, and participate in complete glycosylation of these substrates.

Sortases
Like their Gram-negative counterparts, many Grampositive pathogens express proteins on their outer surfaces that assist in survival during infection of a mammalian host.Because Gram-positive bacteria lack an outer membrane, these proteins must embed themselves into the Gram-positive cell wall to be retained on the outer surface of the bacterium.To fulfill this function, Gram-positive bacteria encode a class of enzymes, called sortases, which covalently attach proteins to the cell wall following secretion across the cytoplasmic membrane (reviewed in references 113,114).
Most Gram-positive bacteria express a variety of sortases, which can range in specificity.For example, the general, "housekeeping" sortase, SrtA, can attach as many as 40 proteins to the cell wall, while other sortases are specific for only one or two proteins (114).Sortases carry out covalent linkages of proteins to the cell wall in a catalytic reaction called transpeptidation.Targets of SrtA typically contain an N-terminal signal peptide, as well as a 30-to 40-residue C-terminal cell wall sorting signal, which is composed of a pentapeptide cleavage site, LPXTG, and a hydrophobic domain (114,115).Proteins destined for cell wall attachment by SrtA are first targeted to the Sec translocase by their N-terminal signal sequences and are translocated across the membrane through the canonical Sec pathway.Next, the sorting signals of these proteins are processed by SrtA, which cuts between the threonine and glycine residues of their LPXTG sites (114,115).The carboxyl group of the threonine is then covalently linked to a cysteine residue on the C-terminus of the sortase, effectively cleaving off the C-terminus of the original protein (114,115).Finally, this intermediate is covalently attached to the amino group on the cell wall precursor lipid II.This modified lipid II is then incorporated into peptidoglycan during cell wall synthesis, effectively embedding the SrtA substrate into the cell wall.Other sortases attach their substrates via a similar catalytic reaction to that used by SrtA, but they have specificities for different LPXTG motifs and amino groups.
Sortases are found in nearly all Gram-positive bacteria and, as mentioned above, process some proteins that contribute to the virulence of many pathogens.Pili are a classical example of cell surface proteins in Grampositive bacteria (113,114).These filamentous protein structures are often involved in adhering to and invading host tissue sites during infection.Pili are typically com-posed of a major subunit, called pilin, and one or more minor subunits, which are usually assembled sequentially using specialized sortases (113,114).Pathogens that are known to utilize pili during infection include Streptococcus pneumoniae, Streptococcus pyogenes, and S. aureus (113,114).

Extracellular Protein Secretion In Gram-Positive Bacteria
Not all secreted proteins in Gram-positive bacteria remain embedded in the cell wall.Rather, many proteins exported across the cytoplasmic membrane by the Sec or Tat pathways are eventually released into the extracellular environment, often through passive diffusion through the peptidoglycan layer.Additionally, some Gram-positive organisms use a separate secretion apparatus (named the T7SS) to export certain proteins across the cytoplasmic membrane and, potentially, through the cell wall.
Like the T3SS and T4SS effectors of Gram-negative bacteria, some proteins secreted by Gram-positive pathogens are delivered to the cytoplasmic compartments of eukaryotic host cells.The mechanisms by which Gram-positive effector proteins reach the cytoplasm of eukaryotic cells are varied and are in large part exemplified by the self-translocating AB toxin model of delivery.However, recent evidence suggests that some Gram-positive organisms may use a protein secretion apparatus to directly deliver certain effector proteins to eukaryotic cells (116).

Gram-positive injectosomes: a model for effector transport into host cells
One secretion apparatus in Gram-positive organisms, coined the "injectosome" (note the difference in spelling from the Gram-negative T3SS injectisome), is proposed to be functionally analogous (but structurally unrelated) to the T4SSs and T3SSs of Gram-negative bacteria.This model of protein secretion has been observed in the Gram-positive pathogen S. pyogenes, which injects at least one virulence factor, NAD glycohydrolase (SPN), into the cytoplasm of keratinocytes by this mechanism (116,117).To create the pore required for SPN translocation, another protein, SLO, is first secreted via the Sec pathway.SLO is a member of a class of toxins called cholesterol-dependent cytolysins, which bind cholesterol on the surface of eukaryotic cells and insert into their membranes, creating pores (118).Following pore formation by SLO, SPN is translocated across the plasma membrane by Sec and into the eukaryotic cell through the pore (119).Once it reaches the cytosol of host cells, SPN cleaves the glycosidic bond of β-NAD + to produce nicotinamide and ADP-ribose, a potent second messenger, thereby disrupting normal cell functions (120).For this reason, SPN serves as a major virulence factor for S. pyogenes, particularly during severe infections with this bacterium.
Interestingly, there is some evidence that SPN translocation is not simply the result of diffusion of effectors through the pore (116,121).Rather, some have speculated that a protected channel is formed between the bacterium and the translocation apparatus, similar to the T3SS (see Fig. 4).However, much more work still needs to be done to determine whether this model is accurate.

The T7SS
Certain Gram-positive organisms, including species of Mycobacteria and Corynebacteria, contain a heavily lipidated cell wall layer called a mycomembrane.These lipids form a very dense, waxy, hydrophobic layer on the outer surface of the bacteria, which serves as an effective barrier against a number of environmental stresses and antimicrobial therapies.However, as one might imagine, this layer makes extracellular protein transport more difficult for these species of bacteria.Therefore, these bacteria utilize specialized mechanisms for protein transport across their inner and mycomembranes, called T7SSs (reviewed in references 105, 122, 123) (see Fig. 5).T7SSs were originally identified in M. tuberculosis in 2003 (124), where they are called ESX systems.These systems have now been identified in a number of bacteria in the order Corynebacteriales.In addition, analogous substrates and some components of these systems have also been identified in several Gram-positive organisms that lack mycomembranes, including the pathogens S. aureus, Bacillus anthracis, and L. monocytogenes (125)(126)(127).
The core structural components of T7SSs, and frequently their substrates, are typically encoded in linked gene clusters (123).In general, five core structural proteins appear in most of these gene clusters.These core components, called EccB, EccC, EccD, EccE, and MycP in the ESX systems, are all membrane proteins (128).All except EccD have hydrophobic domains, and thus all may interact with various other accessory components in the cytoplasm or peptidoglycan layer, such as chaperones or the cytosolic protein, EccA, which may supply the source of energy for substrate transport (129).The four membrane-associated Ecc proteins from ESX-5 form a large inner membrane complex, which presumably Bacterial Secretion Systems: An Overview contains a channel through which the substrates traverse (128).The fifth component, MycP, is a mycosin or subtilisin-like protease.The role of MycP in protein translocation through the T7SS is not completely understood, but it is believed to play an important role in the regulation of secretion (130).T7SSs also have a variable number of additional proteins that are important for the function of specific systems.For instance, some systems may derive energy from the EccA cytosolic protein, an ATPase associated with diverse cellular activities (129).Other T7SSs may use energy generated by EccCb1, a protein that forms a SpoIIIE-type ATPase with the integral membrane component EccCa1 (131).Additionally, in Mycobacteria, chaperones are used to recognize specific substrates and target them to specific ESX systems (132).
While a tremendous amount of work has been done to understand the mechanism of protein translocation through the T7SS since its discovery 12 years ago, we do not yet understand how substrates navigate through the mycomembrane.The mycomembrane has been likened to the outer membrane of Gram-negative bacteria based on electron microscopy studies, so presumably there should be factors required for passage through this layer (133,134).It remains to be seen whether some of the already recognized components of the T7SS, or other not yet identified factors, are critical for passage through this barrier.
T7SSs play a variety of roles in bacterial physiology and pathogenesis.The first system identified, ESX-1, is a major virulence factor in M. tuberculosis (135,136).To date, five T7SSs have been identified in Mycobacteria, named ESX-1 to ESX-5, although not all Mycobacteria harbor all five systems (137).In fact, only ESX-3 and ESX-4 are found in all Mycobacteria species.Curiously, although ESX-4 appears to be the most ancient system, secretion from ESX-4 has not yet been demonstrated, and it lacks several genes found in most other systems.Secretion from ESX-2 has also not been demonstrated.
While some T7SSs can contribute to virulence, as outlined above, not all of these systems function in virulence or even in secretion of substrates.For example, the T7SS in Listeria does not appear essential for virulence (126).Likewise, the ESX-1, which is essential for the virulence of M. tuberculosis, is also present in the nonpathogenic Mycobacterium smegmatis, where it functions in conjugation of DNA substrates (reminiscent of some T4SSs) (138).In M. tuberculosis, ESX-3secreted substrates are critical in iron acquisition and growth in vitro (139), whereas ESX-1 and ESX-5 are essential for virulence but not for growth in medium (124,140).Thus, these systems apparently play diverse roles depending on the species of Mycobacteria.This diversity of function is likely to exist also in their roles in other bacteria.

HOST IMMUNE RECOGNITION OF BACTERIAL SECRETION SYSTEMS
A recent area of active investigation in the fields of bacterial pathogenesis and innate immunity has been the study of how the mammalian immune system discriminates between pathogenic and commensal bacteria.One way in which innate immune systems recognize pathogens is through the utilization of specific receptors and immune cell proteins that sense mechanisms, or patterns, of bacterial pathogenesis (141).This is in contrast to simply sensing molecules carried by both pathogens and commensals, such as lipopolysaccharide or peptidoglycan.One hallmark of bacterial infection for many pathogens is the use of dedicated protein secretion systems to directly deposit effector proteins or toxins into mammalian tissue sites and/or host cells.For this reason, the mammalian innate immune system has developed strategies to detect the use of bacterial secretion systems and/or their secreted substrates during infection (141).Because bacterial secretion of virulence proteins can occur by many different mechanisms, the host immune system has developed multiple methods of sensing these processes (Fig. 6).
One mechanism by which the innate immune response can detect bacterial secretion systems is by sensing the cytosolic access of bacterial products.These products are often small molecules, such as peptidoglycan, flagellin, and lipopolysaccharide, which can be aberrantly translocated into the bacterial cytoplasm through bacterial secretion systems.Because these receptors are limited to the bacterial cytosol, their activation would be indicative of the specific use of a secretion system by an invading pathogen.One such example is the family of cytoplasmic receptors called Nod-like receptors, which can directly sense cytosolic molecules, including lipopolysaccharide and flagellin (141).Activation of these receptors leads to a cascade of signaling that ultimately induces the production of inflammatory cytokines.Additionally, the immune system has developed methods to directly sense the translocation of secreted effectors.For example, recent findings have shown that macrophages can sense manipulation of Rho GTPases by the Yersinia T3SS effector YopE (142).Following detection of this signal, macrophages mount (through an unknown mechanism) a response that ultimately results in clearance of intracellular bacteria.
The mammalian innate immune system can also detect the disruption of membranes by pore-forming proteins, such as the translocons of T3SSs or the cholesteroldependent cytolysins of Gram-positive pathogens, which are often secreted or inserted by bacterial secretion systems that directly deliver effector proteins to target cells.For example, pore formation by SLO of S. pyogenes has been shown to activate the Nod-like receptor family receptor NLRP3 (143).This activation eventually stimulates the production of inflammatory cytokines that help the host to respond to and clear the infection.
Finally, there is some evidence that the host immune system can detect components of secretion channels that protrude out of the bacterial membrane, such as the T3SS needle and components of the translocon.Recently, it has been shown that recognition of several T3SS needle proteins, including YscF of Yersinia and MxiH from Shigella, can induce proinflammatory cytokine production in host cells (144).

CONCLUSIONS
Bacterial pathogens utilize a multitude of methods to invade mammalian hosts, damage tissue sites, and thwart the immune system from responding.One essential component of these strategies for many bacterial pathogens is the secretion of proteins across phospholipid membranes.Secreted proteins can play many roles in promoting bacterial virulence, from enhancing attachment to eukaryotic cells, to scavenging resources in an environmental niche, to directly intoxicating target cells and disrupting their functions.As we discussed in this chapter, these proteins may be transferred out of the bacterial cytoplasm through a variety of mechanisms, usually involving the use of dedicated protein secretion systems.For this reason, the study of protein secretion systems has been an important focus in the field of bacterial pathogenesis.The remaining chapters in this section will offer a more detailed focus on the molecular and functional characteristics of some of these secretion systems.To distinguish between pathogenic and commensal bacteria, the mammalian innate immune system has developed methods to directly recognize patterns unique to bacterial pathogens, such as the use of protein secretion apparatuses.The immune system can sense several facets of bacterial protein secretion.These include the pore formation by secretion systems or secreted proteins, aberrant translocation of bacterial molecules into the cytosol, the presence of effector proteins and/or their activities, as well as the components of the secretion systems themselves.

FIGURE 6
FIGURE 6  Mechanisms of innate immune recognition of bacterial secretion systems.To distinguish between pathogenic and commensal bacteria, the mammalian innate immune system has developed methods to directly recognize patterns unique to bacterial pathogens, such as the use of protein secretion apparatuses.The immune system can sense several facets of bacterial protein secretion.These include the pore formation by secretion systems or secreted proteins, aberrant translocation of bacterial molecules into the cytosol, the presence of effector proteins and/or their activities, as well as the components of the secretion systems themselves.

TABLE 1
Classes of bacterial protein secretion systems