CD4 and colorectal cancer: Thus, to create transcriptional and translational atlas of the colonic mucosa in patients with CD, we performed cellular indexing of transcriptomes and epitopes by sequencing (CITE-seq) with an antibody panel comprising 130 epitopes on colonic CD4+ T cells isolated from the inflamed mucosa of CD patients and unaffected mucosa of colorectal cancer patients (controls) (Table S1).