Cladogram (Figure 7C) and LDA score (Figure 7D) and Bar plot (Figure 7E) demonstrated that anti‐CD40‐induced colitis mice showed a decrease in many members of the Firmicutes phylum (gram‐positive bacteria) and an increase in the members of Bacteroidia phylum (gram‐negative bacteria) (Figures 7C–E). The gene discussed is CD40; the disease is colitis.