Cladogram (Figure 7c; Supplementary Figs. S7c, 7d) and LDA score (Figure 7d; Supplementary Figs. S7e, 7f) generated using LEfSe depicted differentially enriched microbial taxa from the phylum to the genus level between control, anti-CD40 or DSS-induced colitis. This evidence concerns the gene CD40 and colitis.