Interestingly, the large interaction between DNAm and TF activity (TFact) for IRF9, IRF1, STAT2, STAT1, STAT3, TFDP1, FOXM1, E2F3, E2F2, GLI2, and RUNX3 was restricted to SLE patients (Fig. 5a, b). Here, GLI2 is linked to systemic lupus erythematosus.