We also established the LINC00685, SLC16A1-AS1, PVT1, VPS9D1-AS1, SNHG15, and CCDC18-AS1/hsa-miR-532-3p/BMP1 axis as the most potential upstream ncRNA-related pathway of BMP1 in ccRCC. Here, BMP1 is linked to nonpapillary renal cell carcinoma.