Multivariate logistic regression revealed that IL1A rs1609682 TT and HABP2 rs7923349 TT served as independent risk factors for carotid atherosclerosis (OR, 1.45, 95% CI: 1.034–2.032, p = 0.031, and OR, 1.829, 95% CI: 1.228–2.723, p = 0.003). Here, IL1A is linked to carotid atherosclerosis.