Furthermore, the CNA status of the following genes were confirmed to be associated with the prognosis in this study: FOXO3, NCOA2, NKX3.1, ZBTB16, PMP22, CLU, CLIC4, SPOP, and SPP1 (Supplementary Data—PCa Stage Odds Ratios). Here, NKX3-1 is linked to posterior cortical atrophy.