Modules with paired seeds related to the epilepsy phenotype (GABRA3-GABRB1, GRIN2A-GRIN2B and SCN1A-SCN2A) were enriched in terms such as long-term potentiation, chemical synaptic transmission, among others and showed selective expression in deep cortical neurons (Supplementary Table S1). Here, SCN1A is linked to epilepsy.