BAP1 and neoplasm: We then visualized BAP1 transcripts from TCGA datasets with the Integrative Genomics Viewer (IGV), and confirmed the presence of BAP1 transcripts in tumors with truncating mutations and high levels of BAP1 mRNA, indicating escape from NMD (Table S6, Figure S3, tumors A9F1 and AB3K (mRNA levels were not available for this tumor, but it harbors an out-of-frame deletion leading to a frameshift)).