HLA-DQA2 and tuberculosis: We also performed GWAS on subsets of TB endpoints in FinnGen, respiratory TB (1380 cases and 307 312 controls) and TB of other organs (538 cases and 307 259 controls), where a genome-wide significant SNP was identified in respiratory TB GWAS in the HLA locus in between HLA DRA and HLA DQA1 genes and with high linkage disequilibrium (LD) with rs33915496 (rs2395516, P = 4.5E-09, r2 = 0.90) (Supplementary Material, Figs S3 and S4).