For example, we identified putative enhancers of BMPR1B and IHH (Supplementary Table 13d; both genes are associated with brachydactyly type-A, OMIM #112500), and candidate enhancers of RUNX2, a gene linked to cleidocranial dysplasia, with brachydactyly (OMIM #119600) (Supplementary Table 13f). Here, RUNX2 is linked to cleidocranial dysplasia 1.