Using the competitive approach, we observed convergence with the self-contained approach in enrichment, after correcting for multiple testing (FDR <0.05), among miRNA target genes overlapped by rare CNVs in the schizophrenia group for the FMRP targets Ascano (OR = 3.51, FDR = 1.27 × 10–4) and the nervous system development (OR = 1.93, FDR = 0.0331) gene sets (Supplementary Table S10). Here, FMR1 is linked to schizophrenia.