In conclusion, we systematically demonstrated the molecular process of aneuploidy in PCa and identified 11 potential driver genes (GSTM2, HAAO, C2orf88, CYP27A1, FAXDC2, HFE, C8orf88, GSTP1, EFS, HIF3A, and WFDC2). Here, AKAP19 is linked to posterior cortical atrophy.