PTPRC and breast cancer: FlowSOM-defined nodes in CD45+ cells were manually annotated into four main immune cell types [TC, natural killer (NK) cell, BC, myeloid cell [MYE, including monocyte (MC) and dendritic cell (DC)] and then re-clustered into 25 subsets (Supplementary Figs. 1 and 2, Supplementary Table 2).