Consensus network analysis identified 12 consensus modules (genes not assigned to any of the modules are colored gray), including eight upregulated modules and three downregulated modules, in the BRCA1-MUT cohort compared with the WT cohort (Figures 1A,B); and 12 consensus modules including nine upregulated modules and two downregulated modules in BRCA2-MUT BC samples (Figures 1C,D; a complete module-trait heatmap is provided in Supplementary Figure 4). Here, BRCA1 is linked to breast cancer.