Although the Δslt mutant did not colocalize with acidic organelles stained with LysoTracker during the early stages of infection (0.5 h–2 h), the mutant colocalized with the autophagosome marker LC3 and the lysosome marker LAMP-1 during the late stages of infection (12 h–48 h after infection). The gene discussed is MAP1LC3A; the disease is infection.