In order to gain insight to why these BDP5/TAF1 deficient parasites stall in development, we performed RNA-seq analysis of rapalog treated and untreated TAF1/BDP5-FKBP-GFP + Lyn-FRB-T2A-mCherry parasites 2, 6, 12 h after inactivation of BDP5/TAF1 by knock-sideways (corresponding to 16, 20, 26 h post infection). Here, TAF1 is linked to infection.