In our results—obtained in human retinal Müller cells, which have direct relevance to ocular toxoplasmosis—LINC01105, BANCR, MIR17HG, MIR155HG, lnc-SGK1, MEG3, KCNQ1OT1, NEAT1, NeST, and MALAT1 were the most dysregulated lncRNAs with known immunologic activities. Here, NEAT1 is linked to ocular toxoplasmosis.