Among the genes having significant changes in transcript levels, eight represented genomic regions with high signals in the Capture-C assay (KRT8, KRT18, and KRT7; Fig. 3B) or positive Capture-C signal (SIPA1, ITGA5, CDH23, FAIM2, and CNTN1; Fig. 3B) and were previously linked to cancer progression; two (CDH23 and SIPA1) of the eight genes are located in trans, while the other six (CNTN1, KRT8, FAIM2, KRT7, ITGA5, and KRT18) are located in cis. Here, SIPA1 is linked to cancer.