Three SNP-diagnosis pairs passed the PheWAS significance threshold: rs9273349 (HLA-DQB1) and E06 (thyroditis); rs9273349 (HLA-DQB1) and E10 (type-1 diabetes) (Table 6, Fig 2); and rs2281135 (PNPLA3) and K76 (non-alcoholic liver diseases, including NAFLD) (Table 6). Here, HLA-DQB1 is linked to type 1 diabetes mellitus.