In the Haploview analysis, we also found that the haplotype of multiple SNPs “ATGTACGCGA” in the SP110 gene was significantly associated with LTBI risk (p = 0.0225, OR: 2.76, 95% CI: 1.12–6.84) in LTBI cases vs. healthy controls, while the same haplotypes had a protective effect on TB disease (p = 0.03, OR: 0.38, 95% CI: 0.16–0.95) in LTBI individuals vs. TB patients (see Figures S1 and S2 in the Supplementary Materials). The gene discussed is SP110; the disease is tuberculosis.