Trait association to diseases of the red blood cells and coagulation system is observed for antisense lncRNAs to MAPT, SOD1, and FUS. GWAS-associated SNPs linked to diseases of the immune system are present for antisense transcripts to C9orf72 (inflammation and rheumatoid arthritis) and LRRK2 (Crohn’s disease, asthma). Here, LRRK2 is linked to Crohn disease.