To further validate these interactions and quantitative behaviors following JQ1 treatment, we performed immunoprecipitation followed by MS using antibodies to endogenous BRD2, BRD3, and BRD4 (using immunoglobulin G [IgG] as a negative control) in the presence or absence of JQ1, in both HEK293 cells, and in the chronic myeloid leukemia K562 cells, where we previously examined the transcriptional outcome of BET targeting with JQ1 (Picaud et al., 2016). This evidence concerns the gene BRD3 and chronic myelogenous leukemia, BCR-ABL1 positive.