CP and lung adenocarcinoma: As an illustrative example, Table 1 lists the top MSigDB C2.CP pathways for the TCGA lung adenocarcinoma cohort (one of the larger cohorts with stable pathway ranking between predictor sets) with separate lists for the two potential predictor sets (i.e., somatic alterations for COSMIC concensus cancer genes or somatic alterations for all available TCGA genes).