On comparing our result, with existing experimentally validated datasets obtained from various non-coding databases such as NONCODE and LNCipedia, we found that three lncRNAs, lnc-MTAP (CDKN2B-AS1), lnc-PCP4 (DSCAM-S1), lnc-FAM (H19) which was previously reported to be up-regulated in Breast cancer, were also up-regulated in our study. Here, USP9X is linked to breast cancer.