Briefly, this integrated analysis of genomewide DNA methylation and gene expression data identified a group of novel gene signatures (ALX3, B4GALNT1, CTHRC1, DLX5, EMX1, IRX3, OTX1, SIX2, TLX1, VASH2, ZIC2, ZIC4, ZIC5, and ZNF695), which may be regulated by DNA methylation in HCC. Here, ZNF695 is linked to hepatocellular carcinoma.