CTSB and glycogen storage disease VI: Only three non-synonymous SNPs and six large-effect InDels were detected, which were associated with three and six genes, respectively, including cysteine protease family gene (Os04g0402300), methyltransferase (Os09g0415700), pectinesterase (Os01g0634600), disease-resistance gene (Os11g0224900), verticillium wilt disease-resistance gene (Os01g0158600), two NBS-LRR-type disease-resistance genes (Os11g0597700 and Os11g0686500), and two expressed genes (Os08g0528700 and Os10g0134033, Table S4).