ZFHX3 and bladder transitional cell carcinoma: We find that in one BLCA and one BRCA sample, there are TSVs affecting ZFHX3. These two TSVs events are different from each other in terms of the breakpoint partner outside of ZFHX3. In the BLCA tumor sample, an intergenic region is inserted after the third exon of ZFHX3 (see Fig. 5, a; for a visualization with Integrative Genomics Viewer (IGV) [49], see Additional file 1: Figure S5).