M19, a 48-member module with positive correlation to AD phenotypes (Fig. 4), was highly enriched with GO terms and proteins linked to small GTPase-mediated trafficking and signaling (RAB1A, RAB1B, RAB3C, RAB4A, RAB4B, RAB6B, RAB8B, RAB10, RAB12, RAB14, RAB23, RAB35, ARF4, and ARF5) with Rab GTPases RAB1A, RAB1B, RAB4A, and RAB4B as top hub proteins (Fig. 6 and Additional file 6: Table S6). Here, RAB12 is linked to Alzheimer disease.