15 HCC-associated genes (p16, RASSF1A, APC, GSTP1, CDH1, p15, RUNX3, SOCS1, MGMT, SFRP1, PRDM2, DAPK1, p14, RARβ and p73) hypermethylation showed significant evidences between HCC tumor tissues and normal tissues to the risk of HCC. This evidence concerns the gene RUNX3 and hepatocellular carcinoma.