Not surprisingly, we found a strong autoimmunity signature for EBNA2-bound sites (with a q-value = 6.59e-07 for the ‘altered susceptibility to autoimmune disorder’ category) and several phenotypes related to immune response (e.g. B cell function, interferon gamma signaling, thymus-specific gene expression) or deregulation of pluripotency genes for the genomic intervals bound by both factors (S5 Table). Here, IFNG is linked to Autoimmunity.