At an individual gene level, 16 genes (FGFR2, BRCA2, ATM, MLL3, GNAS, NOTCH1, PDGFRA, SMARCA4, NTRK3, PCM1, CLTCL1, FANCE, BCOR, MKL1, NACA and PMS1) in the cancer Gene Census were exclusively observed in DCIS-IDC (1–7 genes per case), but not in pure DCIS (Figure 3). Here, PCM1 is linked to ductal breast carcinoma in situ.