CASP3 and neoplasm: On the basis of the literature, genes to act as ‘prototypes’ for different biological processes - ER for ER signaling, HER2 for HER2 signaling, AURKA for proliferation, CASP3 for apoptosis, VEGF for angiogenesis, PLAU for tumor invasion/metastasis, and, in this case, STAT1 for immune response - were selected. A comparison of linear models was then applied to generate modules of genes specifically associated with each of the prototype genes but not with the other prototypes.