Two SNPs, rs831571 in PSMD6 and rs3786897 in PEPD were nominally associated with type 2 diabetes (rs831571: p = 0.0135, OR = 1.11, 95% confidence interval [CI] 1.02–1.22; rs3786897: p = 0.0407, OR = 1.09, 95% CI 1.004–1.18, adjusted for age, sex, and BMI); however, these associations were not significant after Bonferroni’s correction (p > 0.0055). Here, PSMD6 is linked to type 2 diabetes mellitus.