Of the 14,652 transcripts present in CD33+CD3− myeloid cells, we identified 222 probe sets for 208 unique transcripts with a ≥1.5 fold differential expression (p<0.05, Welch’s t-test, BH-FDR) from SLE patients (n = 11) compared to HC (n = 10). Here, CD33 is linked to systemic lupus erythematosus.